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Evaluating semantic textual similarity in clinical sentences using deep learning and sentence embeddings
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Abstract:
The wide adoption of electronic health records (EHRs) has fostered an improvement in healthcare quality, with EHRs currently representing a major source of medical information. Nevertheless, this process has also brought new challenges to the medical environment since the facilitated replication of information (e.g. using copy-paste) has resulted in less concise and sometimes incorrect information, which hinders the understandability of this data and can compromise the quality of medical decisions drawn from it. Due to the high volume and redundancy in medical data, it is imperative to develop solutions that can condense information whilst retaining its value, with a possible methodology involving the assessment of the semantic similarity between clinical text excerpts. In this paper we present an approach that explores neural networks and different types of text preprocessing pipelines, and that evaluates the impact of using word embeddings or sentence embeddings. We present the results following our participation in the n2c2 shared-task on clinical semantic textual similarity, perform an error analysis and discuss obtained results along with possible future improvements. ; published
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Keyword:
Clinical information extraction; Deep learning; Natural language processing; Semantic textual similarity; Sentence embeddings
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URL: https://doi.org/10.1145/3341105.3373987 http://hdl.handle.net/10773/31473
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Statistical Complexity Analysis of Turing Machine tapes with Fixed Algorithmic Complexity Using the Best-Order Markov Model
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In: Entropy (Basel) (2020)
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Understanding Depression from Psycholinguistic Patterns in Social Media Texts
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Evaluation of word embedding vector averaging functions for biomedical word sense disambiguation
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Overview of the interactive task in BioCreative V
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In: ISSN: 1758-0463 ; EISSN: 1758-0463 ; Database - The journal of Biological Databases and Curation ; https://hal.archives-ouvertes.fr/hal-01469079 ; Database - The journal of Biological Databases and Curation, Oxford University Press, 2016, 2016, ⟨10.1093/database/baw119⟩ ; https://academic.oup.com/database/article-lookup/doi/10.1093/database/baw119 (2016)
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The CHEMDNER corpus of chemicals and drugs and its annotation principles
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An Overview of Biomolecular Event Extraction from Scientific Documents
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Mining biomedical information from scientific literature ; Mineração de informação biomédica a partir de literatura científica
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Benchmarking of the 2010 BioCreative Challenge III text-mining competition by the BioGRID and MINT interaction databases
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In: Krallinger, Martin; Vazquez, Miguel; Leitner, Florian; Salgado, David; Chatr-aryamontri, Andrew; Winter, Andrew; et al.(2011). Benchmarking of the 2010 BioCreative Challenge III text-mining competition by the BioGRID and MINT interaction databases. BMC Bioinformatics, 12(Suppl 8), S3. doi: http://dx.doi.org/10.1186/1471-2105-12-S8-S3. Retrieved from: http://www.escholarship.org/uc/item/44z3n3v1 (2011)
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The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text
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In: ISSN: 1471-2105 ; BMC Bioinformatics ; https://hal.archives-ouvertes.fr/hal-01780325 ; BMC Bioinformatics, BioMed Central, 2011, 12 (Suppl 8), ⟨10.1186/1471-2105-12-S8-S3⟩ (2011)
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Corpógrafo and NooJ: using linguistic resources to obtain aligned concordances from corpora
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Interpretações temporais de sintagmas com a preposição Em
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Linguística e informática : perspectivas recentes do computador em linguística aplicada e descritiva
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