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GatorTron: A Large Clinical Language Model to Unlock Patient Information from Unstructured Electronic Health Records ...
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Tracing Text Provenance via Context-Aware Lexical Substitution ...
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Assessing mental health signals among sexual and gender minorities using Twitter data ...
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Assessing mental health signals among sexual and gender minorities using Twitter data ...
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A Study of Deep Learning Methods for De-identification of Clinical Notes at Cross Institute Settings
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A study of deep learning methods for de-identification of clinical notes in cross-institute settings
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MADEx: A System for Detecting Medications, Adverse Drug Events, and their Relations from Clinical Notes
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Abstract:
INTRODUCTION: Early detection of Adverse Drug Events (ADEs) from Electronic Health Records (EHRs) is an important, challenging task to support pharmacovigilance and drug safety surveillance. A well-known challenge to use clinical text for detection of ADEs is that much of the detailed information is documented in a narrative manner. Clinical Natural Language Processing (NLP) is the key technology to extract information from unstructured clinical text. OBJECTIVE: We present a machine learning-based clinical NLP system - MADEx for detecting medications, ADEs and their relations from clinical notes. METHODS: We developed a Recurrent Neural Network (RNN) model using Long Short-Term Memory (LSTM) strategy for clinical Name Entity Recognition (NER) and compared it with a baseline Conditional Random Fields (CRFs). We developed a modified training strategy for RNN, which outperformed the widely used early stop strategy. For relation extraction, we compared Support Vector Machines (SVMs) and Random Forests on single-sentence relations and cross-sentence relations. We also developed an integrated pipeline to extract entities and relations together by combining RNN and SVMs. RESULTS: MADEx achieved top three best performance (F1-score of 0.8233) for clinical NER in the 2018 Medication and Adverse Drug Events (MADE1.0) challenge. The post-challenge evaluation showed that the relation extraction module and integrated pipeline (identify entity and relation together) of MADEx are comparable to the best systems developed in this challenge. CONCLUSION: This study demonstrated the efficiency of deep learning methods for automatic extraction of medications, ADEs, and their relations from clinical text to support pharmacovigilance and drug safety surveillance.
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URL: https://doi.org/10.1007/s40264-018-0761-0 http://www.ncbi.nlm.nih.gov/pubmed/30600484 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6402874/
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Rome Foundation-Asian working team report: Asian functional gastrointestinal disorder symptom clusters
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Assessing Mental Health Signals among Sexual and Gender Minorities using Twitter Data
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An Analytical Study of Not-negation and No-negation Translated in the Chinese Version of the Fantasy Fiction The Hobbit
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Yang, Xi. - : The University of Queensland, School of Languages and Cultures, 2018
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Potential screening and early diagnosis method for cancer: Tongue diagnosis
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Mirror neuron system based therapy for aphasia rehabilitation
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Research On The Implications Of Business English Teaching On Bilingual Courses In Business Communication.
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