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Anchoring in the past, tweeting from the present: Cognitive bias in journalists’ word choices
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In: PLoS One (2022)
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Surface EMG–based alternative communication (Vojtech et al., 2021) ...
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Surface EMG–based alternative communication (Vojtech et al., 2021) ...
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Surface Electromyography–Based Recognition, Synthesis, and Perception of Prosodic Subvocal Speech
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In: J Speech Lang Hear Res (2021)
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Natural language word embeddings as a glimpse into healthcare language and associated mortality surrounding end of life
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In: BMJ Health Care Inform (2021)
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Enseignement Engagé: Engaging and Motivating French Language Learners ...
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Study of central exclusive [Image: see text] production in proton-proton collisions at [Formula: see text] and 13TeV
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In: Eur Phys J C Part Fields (2020)
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| 8 |
Exploring Anatomic Variants to Enhance Anatomy Teaching: Musculus Sternalis
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In: Biological Sciences Faculty Articles (2020)
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Enseignement Engagé: Engaging and Motivating French Language Learners
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In: All Graduate Plan B and other Reports (2020)
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| 10 |
Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0.
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In: Nature protocols, vol 14, iss 3 (2019)
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| 11 |
Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0.
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Heirendt, Laurent; Arreckx, Sylvain; Pfau, Thomas; Mendoza, Sebastián N; Richelle, Anne; Heinken, Almut; Haraldsdóttir, Hulda S; Wachowiak, Jacek; Keating, Sarah M; Vlasov, Vanja; Magnusdóttir, Stefania; Ng, Chiam Yu; Preciat, German; Žagare, Alise; Chan, Siu HJ; Aurich, Maike K; Clancy, Catherine M; Modamio, Jennifer; Sauls, John T; Noronha, Alberto; Bordbar, Aarash; Cousins, Benjamin; El Assal, Diana C; Valcarcel, Luis V; Apaolaza, Iñigo; Ghaderi, Susan; Ahookhosh, Masoud; Ben Guebila, Marouen; Kostromins, Andrejs; Sompairac, Nicolas; Le, Hoai M; Ma, Ding; Sun, Yuekai; Wang, Lin; Yurkovich, James T; Oliveira, Miguel AP; Vuong, Phan T; El Assal, Lemmer P; Kuperstein, Inna; Zinovyev, Andrei; Hinton, H Scott; Bryant, William A; Aragón Artacho, Francisco J; Planes, Francisco J; Stalidzans, Egils; Maass, Alejandro; Vempala, Santosh; Hucka, Michael; Saunders, Michael A; Maranas, Costas D; Lewis, Nathan E; Sauter, Thomas; Palsson, Bernhard Ø; Thiele, Ines; Fleming, Ronan MT
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In: Nature protocols, vol 14, iss 3 (2019)
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Abstract:
Constraint-based reconstruction and analysis (COBRA) provides a molecular mechanistic framework for integrative analysis of experimental molecular systems biology data and quantitative prediction of physicochemically and biochemically feasible phenotypic states. The COBRA Toolbox is a comprehensive desktop software suite of interoperable COBRA methods. It has found widespread application in biology, biomedicine, and biotechnology because its functions can be flexibly combined to implement tailored COBRA protocols for any biochemical network. This protocol is an update to the COBRA Toolbox v.1.0 and v.2.0. Version 3.0 includes new methods for quality-controlled reconstruction, modeling, topological analysis, strain and experimental design, and network visualization, as well as network integration of chemoinformatic, metabolomic, transcriptomic, proteomic, and thermochemical data. New multi-lingual code integration also enables an expansion in COBRA application scope via high-precision, high-performance, and nonlinear numerical optimization solvers for multi-scale, multi-cellular, and reaction kinetic modeling, respectively. This protocol provides an overview of all these new features and can be adapted to generate and analyze constraint-based models in a wide variety of scenarios. The COBRA Toolbox v.3.0 provides an unparalleled depth of COBRA methods.
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Keyword:
Bioinformatics; Biological; Biological Sciences; Biotechnology; Chemical Sciences; Genome; Medical and Health Sciences; Metabolic Networks and Pathways; Models; q-bio.QM; Software; Systems Biology
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URL: https://escholarship.org/uc/item/4nd5m34r
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| 12 |
Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0
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| 13 |
Creation and analysis of biochemical constraint-based models: the COBRA Toolbox v3.0
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| 15 |
Development of sEMG sensors and algorithms for silent speech recognition
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| 16 |
Novel genetic loci associated with hippocampal volume
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In: ISSN: 2041-1723 ; EISSN: 2041-1723 ; Nature Communications ; https://hal.archives-ouvertes.fr/hal-01488337 ; Nature Communications, Nature Publishing Group, 2017, 8, pp.13624. ⟨10.1038/ncomms13624⟩ (2017)
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| 17 |
Creation and analysis of biochemical constraint-based models: the COBRA Toolbox v3.0 ...
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| 18 |
Search for dark matter produced in association with heavy-flavor quark pairs in proton-proton collisions at [Formula: see text]
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| 19 |
Mining Non-Lattice Subgraphs for Detecting Missing Hierarchical Relations and Concepts in SNOMED CT
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In: Computer Science Faculty Publications (2017)
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Flipping the Classroom: Is it a flipping good idea, or a flop?
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In: James, T, Conradie, H, (2016). Flipping the Classroom: Is it a flipping good idea, or a flop?. 01-02 December 2016, FABENZ Biennial Conference, 3rd, 2016: Accessibility flexibility equity, Auckland, New Zealand, FABENZ, Hamilton, NZ, p. 1-16, http://fabenz.org.nz/conference/ (2016)
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